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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17439671_17440206_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17439671 - 17440206
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTAAATATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTTTGTAAAT
Flanking Amino Acid:
VDSSVKEAIIAVGQENYPQG
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
62.4
0.28
1
52.1
46.3
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
52.9
0.17
2.1
75.95
41.3

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014702
17415770 - 17497830
82061
ENSAPLT00000029061
17415247 - 17462602
47356
ENSAPLT00000026304
17415247 - 17497845
82599
ENSAPLT00000021114
17415247 - 17497830
82584