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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17441489_17442073_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17441489 - 17442073
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATCAC
5'SS Class:
major
3'SS Sequence:
CATTTCTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCTTTGAAG
Flanking Amino Acid:
EQIKSLERARTENFLKHKIR
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
65.6
40.5
Major BPS
100
1.24
0.5
100
0
Major PPT
74.6
0.55
1
75.4
33
Minor 5ss
33.4
-1.9
3
35.7
41.1
Minor BPS
66.1
0.36
1.5
69.81
37.4

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061
ENSAPLT00000029061
17415247 - 17462602
47356
ENSAPLT00000026304
17415247 - 17497845
82599