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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17446481_17476663_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17446481 - 17476663
Intron Length:
30183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
GTATGCTTACAT
Flanking Amino Acid:
YLPPLNERKNVLQLRLQQRR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
92.6
0.96
0.6
91.5
19.7
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
49.3
0.03
2.1
70.97
45.3

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026304
17415247 - 17497845
82599
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061