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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17476882_17491907_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
17476882 - 17491907
Intron Length:
15026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
81.5
0.71
0.8
82.9
27.3
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021114
17415247 - 17497830
82584