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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17520732_17521819_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17520732 - 17521819
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTGGTTAACT
Flanking Amino Acid:
ASVSTDTRKAGGQEQKSTQQ
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
87.8
0.85
0.7
85.4
29.3
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
59.1
0.36
2.4
84.57
42.1

Associated Gene:

Gene:
ERCC4
Ensembl Gene ID:
ENSAPLG00000014154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027658
17519998 - 17533180
13183
ENSAPLT00000014778
17519998 - 17533180
13183