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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17524051_17525277_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17524051 - 17525277
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTTCTTGACT
Flanking Amino Acid:
NKNSEDFGGPGQVLICASDD
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.9
0.67
0.9
74.1
35.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
82.1
1.09
1
91.69
30.7

Associated Gene:

Gene:
ERCC4
Ensembl Gene ID:
ENSAPLG00000014154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027658
17519998 - 17533180
13183
ENSAPLT00000014778
17519998 - 17533180
13183