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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17526185_17526521_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17526185 - 17526521
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAACAATTAATG
Flanking Amino Acid:
ASEKAFGENSGWLFLDSSTS
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
46.2
-0.4
1.8
48.37
38.1

Associated Gene:

Gene:
ERCC4
Ensembl Gene ID:
ENSAPLG00000014154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027658
17519998 - 17533180
13183
ENSAPLT00000014778
17519998 - 17533180
13183