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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17529521_17532289_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17529521 - 17532289
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TACTTTGTAACT
Flanking Amino Acid:
TDRIPANLITGILVYKAHRI
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.9
0.72
1
77
41.9
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
57.2
0.3
2
75.92
41.3

Associated Gene:

Gene:
ERCC4
Ensembl Gene ID:
ENSAPLG00000014154
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027658
17519998 - 17533180
13183
ENSAPLT00000014778
17519998 - 17533180
13183