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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1782276_1792939_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1782276 - 1792939
Intron Length:
10664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCTCCTGACCA
Flanking Amino Acid:
TNPFEGREPPRWIRGEHFKY
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
79.1
37.5
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
66.9
0.38
1
67.2
33
Minor 5ss
51
0.04
2.8
74.4
41.8
Minor BPS
50.7
0.02
1.8
59.45
46.4

Associated Gene:

Gene:
LMF1
Ensembl Gene ID:
ENSAPLG00000003654
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003736
1782101 - 1897788
115688