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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1802102_1804091_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1802102 - 1804091
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCGCA
5'SS Class:
major
3'SS Sequence:
CTGTGTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTGAGACAACT
Flanking Amino Acid:
RIVNTYGAFGSITKERTEVI
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
59
40.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.7
0.49
0.9
64.9
36.5
Minor 5ss
35.6
-1.6
3.5
48.5
47.2
Minor BPS
38.9
-0.7
2.5
61.95
47.4

Associated Gene:

Gene:
LMF1
Ensembl Gene ID:
ENSAPLG00000003654
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003736
1782101 - 1897788
115688