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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1804228_1806751_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1804228 - 1806751
Intron Length:
2524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCATCCGCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCGAA
U12 Branch Point Sequence:
GTGTCCCGAACA
Flanking Amino Acid:
AAGEKPPLGYVVNISFGLLI
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.6
37.9
Major BPS
48.8
-0
1.3
46.3
38.7
Major PPT
51.5
0.03
1.1
48.6
39.5
Minor 5ss
35.6
-1.6
2.9
44.4
43.5
Minor BPS
57.3
0.22
1.9
70.32
41.3

Associated Gene:

Gene:
LMF1
Ensembl Gene ID:
ENSAPLG00000003654
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003736
1782101 - 1897788
115688