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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1979906_1981068_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1979906 - 1981068
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
AACCCCCAACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TCTTCCTTACAA
Flanking Amino Acid:
ELSKTLGKLWRLLSENEKRP
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
62.4
0.31
1
64
32.1
Major PPT
54.2
0.1
1
45.1
35.8
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
66.9
0.53
1.7
76.43
40.8

Associated Gene:

Gene:
SOX8
Ensembl Gene ID:
ENSAPLG00000003216
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003270
1979462 - 1982918
3457