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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1981308_1982181_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1981308 - 1982181
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGC
5'SS Class:
major
3'SS Sequence:
CCTTTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTCTCCTTAAAG
Flanking Amino Acid:
ADSHHHGDHAGQTHGPPTPP
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.2
39.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
78.6
0.64
0.8
76.3
32.3
Minor 5ss
28.9
-2.4
3.6
41.1
45.6
Minor BPS
69.9
0.48
1.5
68.4
44.9

Associated Gene:

Gene:
SOX8
Ensembl Gene ID:
ENSAPLG00000003216
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003270
1979462 - 1982918
3457