About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2051550_2056003_F

Intron Information:

Intron Rank:
134667
Intron Class:
major
Intron Phase:
Intron Coordinates:
2051550 - 2056003
Intron Length:
4454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAAAATGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.8
0.67
0.7
77.5
24.4
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
42.2
-0.5
2.1
56.57
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022409
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039816
2051305 - 2057391
6087