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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2073246_2078048_R

Intron Information:

Intron Rank:
144161
Intron Class:
major
Intron Phase:
Intron Coordinates:
2073246 - 2078048
Intron Length:
4803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GCCTCATTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
85.1
0.79
0.8
77
37.3
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
52.9
0.17
2
69.56
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024828
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021839
2072812 - 2082605
9794