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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2078166_2082125_R

Intron Information:

Intron Rank:
144162
Intron Class:
major
Intron Phase:
Intron Coordinates:
2078166 - 2082125
Intron Length:
3960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TACTGCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
78.4
0.64
0.8
70.5
36.2
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
53.8
0.2
2
72.6
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024828
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021839
2072812 - 2082605
9794