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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2160266_2161031_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2160266 - 2161031
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTACGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTCCTTTACG
Flanking Amino Acid:
QPTIDITILKGEKGEMGEKG
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
80.2
0.68
0.9
72.8
37.4
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
79.2
0.77
1.6
84
35.8

Associated Gene:

Gene:
C1QTNF8
Ensembl Gene ID:
ENSAPLG00000020620
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022287
2158536 - 2164563
6028