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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2187411_2189368_R

Intron Information:

Intron Rank:
147461
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2187411 - 2189368
Intron Length:
1958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTCTAC
5'SS Class:
weak_major
3'SS Sequence:
TTCTCCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTCTCCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
55
39
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
76.3
0.59
0.9
72.5
32.3
Minor 5ss
43.3
-0.7
3.1
55.7
44
Minor BPS
68.9
0.59
1.7
79.49
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026667
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047766
2187291 - 2191727
4437
ENSAPLT00000021488
2186101 - 2195477
9377