Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2190163_2190976_R

Intron Information:

Intron Rank:

147466

Intron Class:

major

Intron Phase:

Intron Coordinates:

2190163 - 2190976

Intron Length:

814

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTCTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

ATTACTGTCATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

81.4

26.2

Major BPS

0.72

38.9

Major PPT

82.2

0.72

0.8

77.5

31.3

Minor 5ss

-2.1

2.7

37.8

40.1

Minor BPS

43.1

-0.6

2.3

53.71

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026667

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047766

2187291 - 2191727

4437