Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2199269_2200825_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2199269 - 2200825

Intron Length:

1557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACACT

5'SS Class:

strong_major

3'SS Sequence:

TAATTCTGTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATATTACT

Flanking Amino Acid:

VELCRDAAQFRLINEVEELT

Intron Amino Acid Position:

450

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

77.8

36.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.8

0.58

73.8

41.1

Minor 5ss

41.4

-1

58.6

45.7

Minor BPS

52.8

0.17

2.1

82.23

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002894

2198725 - 2209684

10960