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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2202005_2202278_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2202005 - 2202278
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGGCTTTACCC
Flanking Amino Acid:
FHPSSVKFEESASTPETWAK
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.8
0.85
0.6
81.5
30.6
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
59.4
0.28
1.7
69.38
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002857
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002894
2198725 - 2209684
10960