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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2243436_2252968_F

Intron Information:

Intron Rank:
141714
Intron Class:
major
Intron Phase:
Intron Coordinates:
2243436 - 2252968
Intron Length:
9533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ACCTCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACTTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.4
0.57
0.9
65.7
39.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
60
0.4
1.7
75.92
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026311
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033166
2240474 - 2253112
12639