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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2298743_2299821_F

Intron Information:

Intron Rank:
150621
Intron Class:
major
Intron Phase:
Intron Coordinates:
2298743 - 2299821
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GGGTTTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.4
0.69
0.7
78.4
28.7
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
49.5
-0
1.5
54.74
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030926
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038513
2298003 - 2317002
19000
ENSAPLT00000037971
2298003 - 2315582
17580