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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2313245_2314639_F

Intron Information:

Intron Rank:
150623
Intron Class:
major
Intron Phase:
Intron Coordinates:
2313245 - 2314639
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCGGTACTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTCCCCTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
77.1
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
61.8
0.27
1.1
61
39.3
Minor 5ss
33.8
-1.8
4
54.5
49.7
Minor BPS
54
0.21
1.8
74.39
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030926
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037971
2298003 - 2315582
17580