About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2315527_2315939_F

Intron Information:

Intron Rank:
150627
Intron Class:
major
Intron Phase:
Intron Coordinates:
2315527 - 2315939
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAGAA
U12 Branch Point Sequence:
CCCTGCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
46.7
-0.2
0.9
39.1
29
Major PPT
75.2
0.57
0.8
68.6
31.7
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
37.8
-0.8
2.3
52.09
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030926
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043138
2314833 - 2317037
2205