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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2464731_2468208_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2464731 - 2468208

Intron Length:

3478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

TCACGGTGCACG

Flanking Amino Acid:

GKLQQLVGEHGLRRTSSRLS

Intron Amino Acid Position:

284

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

74.1

Major BPS

52.1

0.05

1.3

41.8

Major PPT

0.74

0.7

76.9

Minor 5ss

32.7

-2

3.1

37.9

40.9

Minor BPS

33.2

-1.4

2.5

38.09

44.4

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777