Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2494452_2495447_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2494452 - 2495447

Intron Length:

996

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCACTGCC

5'SS Class:

major

3'SS Sequence:

TTGCATCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTGCTGTTAATA

Flanking Amino Acid:

NIFDGIIVVISVWEIIGQSD

Intron Amino Acid Position:

472

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.5

0.39

1.4

67.6

39.2

Major BPS

84.4

0.85

34.5

Major PPT

76.6

0.6

0.9

70.1

36.1

Minor 5ss

34.9

-1.7

45.6

42.5

Minor BPS

48.8

-0.1

2.1

59.54

41.2

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014513

2462012 - 2547788

85777

ENSAPLT00000030655

2462012 - 2547788

85777