Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2496442_2498104_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2496442 - 2498104

Intron Length:

1663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTCT

5'SS Class:

strong_major

3'SS Sequence:

CACCTCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAG

U12 Branch Point Sequence:

TCGCGCTTCACC

Flanking Amino Acid:

LLWAIVTVFQILTQEDWNVV

Intron Amino Acid Position:

574

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.8

81.4

33.4

Major BPS

56.5

0.16

1.6

40.9

Major PPT

75.5

0.57

0.8

31.1

Minor 5ss

46.5

-0.4

2.8

65.7

45.4

Minor BPS

47.6

-0.2

2.2

59.14

45.9

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777