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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2498261_2502871_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2498261 - 2502871

Intron Length:

4611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

AATCTGTTAATT

Flanking Amino Acid:

AILVEGFQAEGDANRSDTDE

Intron Amino Acid Position:

626

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

84.4

0.85

34.5

Major PPT

81.9

0.72

0.7

76.4

25.6

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

53.9

0.2

72.6

38.4

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777