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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2507223_2507927_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2507223 - 2507927

Intron Length:

705

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTATCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TGTTTTCTATCC

Flanking Amino Acid:

AMDYEDDMEDSYCYRIRKVL

Intron Amino Acid Position:

871

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

24.8

Major BPS

0.3

62.3

30.4

Major PPT

81.8

0.71

0.9

74.1

40.6

Minor 5ss

43.1

-0.8

3.1

62.8

Minor BPS

49.9

-0

1.9

67.17

38.5

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777