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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2508029_2508427_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2508029 - 2508427
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ACCATATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCATAT
U12 Branch Point Sequence:
TCCACCATATCT
Flanking Amino Acid:
WSLYLFSPQNRFRVMCQKVI
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
52.8
0.07
1.1
49
36.2
Major PPT
69.8
0.45
0.9
61.6
38.4
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
49.5
0.05
2
69.49
46.9

Associated Gene:

Gene:
CACNA1H
Ensembl Gene ID:
ENSAPLG00000013842
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030655
2462012 - 2547788
85777
ENSAPLT00000014513
2462012 - 2547788
85777