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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2509055_2511244_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2509055 - 2511244

Intron Length:

2190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTATGTTCA

5'SS Class:

major

3'SS Sequence:

TGGCTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TAAAAATTAAAA

Flanking Amino Acid:

LRLLRTLRPLRVISRAPGLK

Intron Amino Acid Position:

1030

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

70.7

35.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.8

0.74

0.9

80.5

Minor 5ss

47.1

-0.3

2.4

59.5

Minor BPS

47.2

-0.2

1.9

58.78

39.3

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777