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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2513925_2521770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2513925 - 2521770

Intron Length:

7846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGGAGA

5'SS Class:

major

3'SS Sequence:

TCTTTTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTCAT

U12 Branch Point Sequence:

CCTGCACTCATT

Flanking Amino Acid:

RLRRLEKKRRKAQRRPYYAD

Intron Amino Acid Position:

1209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

63.3

42.8

Major BPS

74.8

0.62

0.9

75.3

29.7

Major PPT

89.5

0.89

0.6

22.6

Minor 5ss

32.9

-2

3.1

36.1

41.8

Minor BPS

40.4

-0.6

2.2

56.93

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777