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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2521923_2523822_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2521923 - 2523822

Intron Length:

1900

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

GTTGGTCTAACT

Flanking Amino Acid:

MSMEHYNQPKSLDEALKYCN

Intron Amino Acid Position:

1260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.95

0.8

31.7

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

86.1

0.81

0.7

83.7

24.4

Minor 5ss

31.7

-2.1

3.3

42.5

44.5

Minor BPS

48.6

-0

2.2

72.99

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777