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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2525193_2525770_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2525193 - 2525770

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGCCT

5'SS Class:

major

3'SS Sequence:

GTTTTCGTTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CTGACCGGGATT

Flanking Amino Acid:

RIMRVLRIARVLKLLKMATG

Intron Amino Acid Position:

1341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

67.2

43.9

Major BPS

66.3

0.4

1.1

41.8

Major PPT

78.8

0.65

0.9

73.7

36.9

Minor 5ss

32.3

-2

3.5

48.5

47.2

Minor BPS

43.4

-0.4

2.1

59.9

44.2

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777