Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2535208_2537234_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2535208 - 2537234

Intron Length:

2027

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

CTTTACTGACGT

Flanking Amino Acid:

ALGVELFGKLDCSEENPCEG

Intron Amino Acid Position:

1391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.5

1.05

0.7

92.2

16.5

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

86.5

0.82

0.7

81.2

23.9

Minor 5ss

-2.1

2.8

41.5

45.1

Minor BPS

46.4

-0.2

2.2

69.51

46.9

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777

ENSAPLT00000014513

2462012 - 2547788

85777