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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2538177_2539550_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2538177 - 2539550

Intron Length:

1374

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATGGTT

5'SS Class:

major

3'SS Sequence:

CCCTGATTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGCTTTTTATCT

Flanking Amino Acid:

SAVQAKHQALEALSCENVSL

Intron Amino Acid Position:

1545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

71.5

38.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

64.9

0.33

1.1

67.1

37.4

Minor 5ss

35.4

-1.7

3.8

52.3

46.7

Minor BPS

61.8

0.45

1.6

75.62

41.6

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014513

2462012 - 2547788

85777