Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2538177_2542763_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2538177 - 2542763

Intron Length:

4587

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATGGTT

5'SS Class:

major

3'SS Sequence:

CCTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TGCTGAGTGACC

Flanking Amino Acid:

SAVQAKHQALVGTASLRPQD

Intron Amino Acid Position:

1545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

71.5

38.2

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

82.3

0.73

0.8

76.1

32.4

Minor 5ss

35.4

-1.7

3.8

52.3

46.7

Minor BPS

-0.7

2.5

55.36

43.2

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030655

2462012 - 2547788

85777