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Intron Name: Anas_platyrhynchos_platyrhynchos_15_2539698_2542763_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2539698 - 2542763

Intron Length:

3066

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAATGAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TGCTGAGTGACC

Flanking Amino Acid:

SHHPPGHEAEVGTASLRPQD

Intron Amino Acid Position:

1594

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.3

29.2

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

82.3

0.73

0.8

76.1

32.4

Minor 5ss

26.9

-2.7

3.1

33.8

42.3

Minor BPS

-0.7

2.5

55.36

43.2

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014513

2462012 - 2547788

85777