Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2546138_2546618_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2546138 - 2546618

Intron Length:

481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGGC

5'SS Class:

strong_major

3'SS Sequence:

CCTCCCCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAG

U12 Branch Point Sequence:

TCGCCCCCACCT

Flanking Amino Acid:

PTLNKLLCRQEAVRTDSVDV

Intron Amino Acid Position:

1716

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.8

73.3

36.4

Major BPS

44.4

-0.3

1.6

54.3

42.9

Major PPT

78.5

0.64

0.8

68.9

31.6

Minor 5ss

30.8

-2.2

3.3

41.8

Minor BPS

-0.3

2.1

62.38

47.1

Associated Gene:

Gene:

CACNA1H

Ensembl Gene ID:

ENSAPLG00000013842

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014513

2462012 - 2547788

85777

ENSAPLT00000030655

2462012 - 2547788

85777