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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2556088_2556230_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2556088 - 2556230
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GTCCCGCTGACG
Flanking Amino Acid:
AVNGQIESGEFPGFDDLYCK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
72.3
0.5
0.8
65.7
30.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
42.4
-0.7
2.3
49.82
43.9

Associated Gene:

Gene:
B9D1
Ensembl Gene ID:
ENSAPLG00000022447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032073
2555902 - 2558992
3091