Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2556682_2557158_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2556682 - 2557158

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

CATTTCTGAAGG

Flanking Amino Acid:

GAVHVPFTPGRHKRTVAMFV

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.1

38.4

Major BPS

82.1

0.8

71.6

36.4

Major PPT

75.9

0.58

0.9

Minor 5ss

33.3

-1.9

2.8

45.7

Minor BPS

50.2

-0.1

1.9

56.77

44.6

Associated Gene:

Gene:

B9D1

Ensembl Gene ID:

ENSAPLG00000022447

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032073

2555902 - 2558992

3091