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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2557222_2558037_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2557222 - 2558037
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTTATTTATTT
Flanking Amino Acid:
ESTSRLQKFTSWFTGRRPEF
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.74
0.9
82.8
32.6
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
54
0.2
1.7
71.97
39.2

Associated Gene:

Gene:
B9D1
Ensembl Gene ID:
ENSAPLG00000022447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032073
2555902 - 2558992
3091