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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2558106_2558263_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2558106 - 2558263
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
CCTCTCTTAACC
Flanking Amino Acid:
KVVAQGEGREVTRVRSQGFV
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
87.3
0.84
0.6
81.2
30.9
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
70.3
0.62
1.3
71.01
40.5

Associated Gene:

Gene:
B9D1
Ensembl Gene ID:
ENSAPLG00000022447
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032073
2555902 - 2558992
3091