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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2572745_2574293_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2572745 - 2574293
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
APANKPLSTSGSTSFDLFSN
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
EPN2
Ensembl Gene ID:
ENSAPLG00000013138
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025431
2561779 - 2589874
28096
ENSAPLT00000021203
2566874 - 2589874
23001
ENSAPLT00000021049
2570785 - 2589723
18939
ENSAPLT00000045390
2566874 - 2589874
23001
ENSAPLT00000013707
2550721 - 2589723
39003
ENSAPLT00000039632
2561088 - 2589874
28787