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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2577660_2579188_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2577660 - 2579188
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TCTATATCAACA
Flanking Amino Acid:
LAMSREVAEQEERLRRGDDL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
70.2
0.5
1
72.1
33
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
49.9
-0
1.8
65.32
40.8

Associated Gene:

Gene:
EPN2
Ensembl Gene ID:
ENSAPLG00000013138
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021049
2570785 - 2589723
18939
ENSAPLT00000045390
2566874 - 2589874
23001
ENSAPLT00000013707
2550721 - 2589723
39003
ENSAPLT00000039632
2561088 - 2589874
28787
ENSAPLT00000036800
2566874 - 2589874
23001
ENSAPLT00000025431
2561779 - 2589874
28096