Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_258556_260593_F

Intron Information:

Intron Rank:

137472

Intron Class:

major

Intron Phase:

Intron Coordinates:

258556 - 260593

Intron Length:

2038

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTCTCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTCATCTGTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

74.9

35.3

Major BPS

100

1.24

0.5

100

Major PPT

82.7

0.74

0.7

80.4

Minor 5ss

28.5

-2.5

3.4

40.8

45.6

Minor BPS

48.5

-0

1.8

68.72

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024018

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031437

257700 - 260994

3295