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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2626166_2627262_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2626166 - 2627262
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GTGCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGCTTTTTACAG
Flanking Amino Acid:
PKNYIKIKPHPWYAGRISRH
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
70.1
40.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
81.8
0.72
0.9
75.8
38.2
Minor 5ss
38.9
-1.3
2.7
51.9
37.5
Minor BPS
48
-0.2
1.8
52.19
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012882
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013414
2624994 - 2629223
4230