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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2630249_2630524_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2630249 - 2630524
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCGGCACCT
5'SS Class:
weak_major
3'SS Sequence:
CTCTCCGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTGTCCCCACGC
Flanking Amino Acid:
HPKPPLAGDTGPCSATPALR
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.3
50.6
39.8
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
67.8
0.4
1
60.9
40.2
Minor 5ss
23.1
-3.1
4.1
36.3
42.7
Minor BPS
40
-0.7
2.2
50.74
46

Associated Gene:

Gene:
SLC5A10
Ensembl Gene ID:
ENSAPLG00000011963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038447
2630124 - 2664150
34027