About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2644480_2648210_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2644480 - 2648210
Intron Length:
3731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCCCCGCTCACG
Flanking Amino Acid:
RAQMHAGHLKNLRVRSTGGT
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
36
-1.2
2.4
37.79
44.6

Associated Gene:

Gene:
FAM83G
Ensembl Gene ID:
ENSAPLG00000012644
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013165
2638596 - 2653579
14984